Gene: AT4G04620
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G04620
- Transcript Identifier AT4G04620.2
- Gene Type Coding gene
- Location Chr4 : 2328663-2329926 : negative
Gene Family Information
- ID HOM05D000698
- #Genes/#Species 816/99
- Phylogenetic origin
- ID ORTHO05D000839
- #Genes/#Species 588/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT4G04620.2
- symbol ATG8B
- full_name autophagy 8b
- uniprot Q9XEB5
Descriptions
- Description Ubiquitin-like superfamily protein
- Computational description autophagy 8b (ATG8B); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G21980.2); Has 1515 Blast hits to 1513 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 720; Fungi - 178; Plants - 303; Viruses - 3; Other Eukaryotes - 311 (source: NCBI BLink).
- Computational description autophagy 8b (ATG8B); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G21980.2); Has 1518 Blast hits to 1516 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 723; Fungi - 178; Plants - 303; Viruses - 3; Other Eukaryotes - 311 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0006995 | IBA | Gene Ontology | cellular response to nitrogen starvation | 1 |
GO:0006914 | IEA | GOA Database | autophagy | |
GO:0015031 | IEA | GOA Database | protein transport |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005515 | IPI | Gene Ontology | protein binding | 2 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005856 | IEA | GOA Database | cytoskeleton | |
GO:0005774 | IEA | GOA Database | vacuolar membrane | |
GO:0000421 | IEA | GOA Database | autophagosome membrane | |
GO:0005773 | IEA | GOA Database | vacuole | |
GO:0005874 | IEA | GOA Database | microtubule | |
GO:0031410 | IEA | GOA Database | cytoplasmic vesicle | |
GO:0016020 | IEA | GOA Database | membrane | |
GO:0005737 | IEA | GOA Database | cytoplasm |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
19.3.3.4.1 | Protein homeostasis.autophagy.phagophore expansion.ATG8-phosphatidylethanolamine conjugation system.ubiquitin-fold protein (ATG8) |