Gene: AT4G04620

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G04620
  • Transcript Identifier AT4G04620.2
  • Gene Type Coding gene
  • Location Chr4 : 2328663-2329926 : negative

Gene Family Information

  • ID HOM05D000698
  • #Genes/#Species 816/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G04620.2
  • symbol ATG8B
  • full_name autophagy 8b
  • uniprot Q9XEB5

Descriptions

  • Description Ubiquitin-like superfamily protein
  • Computational description autophagy 8b (ATG8B); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G21980.2); Has 1515 Blast hits to 1513 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 720; Fungi - 178; Plants - 303; Viruses - 3; Other Eukaryotes - 311 (source: NCBI BLink).
  • Computational description autophagy 8b (ATG8B); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G21980.2); Has 1518 Blast hits to 1516 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 723; Fungi - 178; Plants - 303; Viruses - 3; Other Eukaryotes - 311 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006995
IBA
Gene Ontologycellular response to nitrogen starvation1
GO:0006914
IEA
GOA Databaseautophagy
GO:0015031
IEA
GOA Databaseprotein transport

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005856
IEA
GOA Databasecytoskeleton
GO:0005774
IEA
GOA Databasevacuolar membrane
GO:0000421
IEA
GOA Databaseautophagosome membrane
GO:0005773
IEA
GOA Databasevacuole
GO:0005874
IEA
GOA Databasemicrotubule
GO:0031410
IEA
GOA Databasecytoplasmic vesicle
GO:0016020
IEA
GOA Databasemembrane
GO:0005737
IEA
GOA Databasecytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004241 Autophagy protein Atg8 ubiquitin-like
IPR029071 Ubiquitin-like domain superfamily
Mapman id Description
19.3.3.4.1 Protein homeostasis.autophagy.phagophore expansion.ATG8-phosphatidylethanolamine conjugation system.ubiquitin-fold protein (ATG8)