Gene: AT4G02990
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G02990
- Transcript Identifier AT4G02990.1
- Gene Type Coding gene
- Location Chr4 : 1322158-1323783 : positive
Gene Family Information
- ID HOM05D002901
- #Genes/#Species 238/96
- Phylogenetic origin
- ID ORTHO05D003183
- #Genes/#Species 239/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT4G02990.1
- symbol BSM
- Alias RUG2,RUGOSA 2
- full_name BELAYA SMERT
- uniprot Q9ZT96
Descriptions
- Description Mitochondrial transcription termination factor family protein
- Computational description Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G44020.1); Has 1500 Blast hits to 957 proteins in 84 species: Archae - 0; Bacteria - 2; Metazoa - 103; Fungi - 3; Plants - 1315; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042254 | ISO | PLAZA Integrative Orthology | ribosome biogenesis | Zm00001eb349900 |
| GO:0006355 | IEA | Gene Ontology | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0006353 | IEA | GOA Database | DNA-templated transcription, termination | |
| GO:0032502 | IMP IBA | Gene Ontology | developmental process | 1 2 |
| GO:0042794 | IMP | Gene Ontology | plastid rRNA transcription | 1 |
| GO:0042793 | IMP | Gene Ontology | plastid transcription | 1 |
| GO:0009793 | IMP | Gene Ontology | embryo development ending in seed dormancy | 1 |
| GO:0008380 | IMP | Gene Ontology | RNA splicing | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | IDA | Gene Ontology | mRNA binding | 3 |
| GO:0003690 | IEA | Gene Ontology | double-stranded DNA binding | |
| GO:0003690 | IEA | InterPro | double-stranded DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | Zm00001eb349900 |
| GO:0009536 | IEA | GOA Database | plastid | |
| GO:0009536 | IDA | Gene Ontology | plastid | 1 |
| GO:0005739 | IEA | GOA Database | mitochondrion | |
| GO:0005739 | ISM | Gene Ontology | mitochondrion | |
| GO:0009507 | IEA | GOA Database | chloroplast |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.6.2.2 | RNA biosynthesis.organelle machinery.transcriptional regulation.transcription factor (mTERF) |
| 16.11.4.1.1.6 | RNA processing.organelle machinery.pre-mRNA splicing.plastidial RNA splicing.group-II intron splicing.splicing factor (mTERF4) |