Gene: AT4G00990

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G00990
  • Transcript Identifier AT4G00990.1
  • Gene Type Coding gene
  • Location Chr4 : 427035-431535 : positive

Gene Family Information

  • ID HOM05D000451
  • #Genes/#Species 1160/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G00990.1
  • uniprot Q8VYB9

Descriptions

  • Description Transcription factor jumonji (jmjC) domain-containing protein
  • Computational description Transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G11950.1); Has 966 Blast hits to 671 proteins in 113 species: Archae - 0; Bacteria - 8; Metazoa - 538; Fungi - 54; Plants - 301; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0033169
IDA
IBA
IEA
Gene Ontologyhistone H3-K9 demethylation1 2
GO:0033169
IEA
InterProhistone H3-K9 demethylation
GO:0042742
IMP
Gene Ontologydefense response to bacterium2
GO:2000028
IMP
Gene Ontologyregulation of photoperiodism, flowering2
GO:0006357
IBA
Gene Ontologyregulation of transcription by RNA polymerase II1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032454
IDA
IBA
IEA
Gene Ontologyhistone demethylase activity (H3-K9 specific)1 2
GO:0032454
IEA
InterProhistone demethylase activity (H3-K9 specific)
GO:0003712
IBA
Gene Ontologytranscription coregulator activity1
GO:0031490
IBA
Gene Ontologychromatin DNA binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0000785
IBA
Gene Ontologychromatin1
GO:0000118
IBA
Gene Ontologyhistone deacetylase complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR045109 Histone demethylase JHDM2-like
IPR003347 JmjC domain
Mapman id Description
12.3.3.8.1 Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (KDM3)