Gene: AT4G00540

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G00540
  • Transcript Identifier AT4G00540.1
  • Gene Type Coding gene
  • Location Chr4 : 234597-237356 : negative

Gene Family Information

  • ID HOM05D000119
  • #Genes/#Species 2812/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G00540.1
  • symbol MYB3R2
  • Alias ATMYB3R2,myb domain protein 3r2,MYB3R-2,MYB DOMAIN PROTEIN 3R2,PC-MYB2,C-MYB-LIKE TRANSCRIPTION FACTOR 3R-2
  • uniprot Q9SPN3

Descriptions

  • Description myb domain protein 3r2
  • Computational description myb domain protein 3r2 (MYB3R2); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like protein (TAIR:AT4G32730.2); Has 13272 Blast hits to 8134 proteins in 555 species: Archae - 0; Bacteria - 0; Metazoa - 1137; Fungi - 983; Plants - 8207; Viruses - 4; Other Eukaryotes - 2941 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042752
IMP
Gene Ontologyregulation of circadian rhythm1
GO:0006355
IBA
Gene Ontologyregulation of transcription, DNA-templated2
GO:0006357
IEA
GOA Databaseregulation of transcription by RNA polymerase II

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043565
ISS
Gene Ontologysequence-specific DNA binding
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity3
GO:0000981
IBA
Gene OntologyDNA-binding transcription factor activity, RNA polymerase II-specific2
GO:0000978
IBA
Gene OntologyRNA polymerase II cis-regulatory region sequence-specific DNA binding2
GO:0003677
IEA
GOA DatabaseDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001005 SANT/Myb domain
IPR009057 Homeobox-like domain superfamily
IPR017930 Myb domain
Mapman id Description
15.5.2.1 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)