Gene: AT4G00100

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G00100
  • Transcript Identifier AT4G00100.1
  • Gene Type Coding gene
  • Location Chr4 : 37172-38123 : positive

Gene Family Information

  • ID HOM05D000922
  • #Genes/#Species 652/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G00100.1
  • symbol RPS13A
  • Alias ATRPS13A,ribosomal protein S13A,PFL2,POINTED FIRST LEAF 2,RPS13
  • uniprot P59224

Descriptions

  • Description ribosomal protein S13A
  • Computational description ribosomal protein S13A (RPS13A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, trichome morphogenesis, leaf morphogenesis, cytokinesis by cell plate formation; LOCATED IN: cytosolic small ribosomal subunit, nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13/S15, N-terminal (InterPro:IPR012606), Ribosomal protein S15 (InterPro:IPR000589), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: Ribosomal protein S13/S15 (TAIR:AT3G60770.1); Has 1100 Blast hits to 1100 proteins in 416 species: Archae - 259; Bacteria - 0; Metazoa - 343; Fungi - 146; Plants - 139; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
GOA Databasetranslation
GO:0006412
TAS
Gene Ontologytranslation1
GO:0006412
IEA
InterProtranslation
GO:0010090
IMP
Gene Ontologytrichome morphogenesis1
GO:0009965
IMP
Gene Ontologyleaf morphogenesis1
GO:0000911
IMP
Gene Ontologycytokinesis by cell plate formation1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IDA
IEA
GOA Databasestructural constituent of ribosome
GO:0003735
ISS, IBA
Gene Ontologystructural constituent of ribosome1 2
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0070181
IBA
Gene Ontologysmall ribosomal subunit rRNA binding2
GO:0003729
IDA
Gene OntologymRNA binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005840
IEA
GOA Databaseribosome
GO:0005840
IEA
InterProribosome
GO:0005783
IDA
GOA Databaseendoplasmic reticulum
GO:0005783
HDA
Gene Ontologyendoplasmic reticulum4
GO:0005730
IDA
GOA Databasenucleolus
GO:0005730
HDA
IBA
Gene Ontologynucleolus2 5
GO:0022627
IDA
GOA Databasecytosolic small ribosomal subunit
GO:0022627
HDA
IBA
NAS
Gene Ontologycytosolic small ribosomal subunit1 2 6
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005829
HDA
RCA
Gene Ontologycytosol7 8
GO:0005794
RCA
Gene OntologyGolgi apparatus9

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000589 Ribosomal protein S15
IPR009068 S15/NS1, RNA-binding
IPR012606 Ribosomal protein S13/S15, N-terminal
IPR023029 Ribosomal protein S15P
Mapman id Description
17.1.3.1.14 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS13