Gene: AT3G62870
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G62870
- Transcript Identifier AT3G62870.1
- Gene Type Coding gene
- Location Chr3 : 23242862-23244273 : negative
Gene Family Information
- ID HOM05D001675
- #Genes/#Species 386/97
- Phylogenetic origin
- ID ORTHO05D001808
- #Genes/#Species 351/97
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G62870.1
- uniprot Q9LZH9
Descriptions
- Description Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
- Computational description Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7A/L8 (InterPro:IPR001921), Ribosomal protein L7Ae/L8/Nhp2 family (InterPro:IPR018492), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038), Ribosomal protein L7Ae conserved site (InterPro:IPR004037); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT2G47610.1); Has 2083 Blast hits to 2081 proteins in 414 species: Archae - 338; Bacteria - 1; Metazoa - 718; Fungi - 357; Plants - 268; Viruses - 0; Other Eukaryotes - 401 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042254 | IEA | GOA Database | ribosome biogenesis | |
| GO:0000470 | IBA | Gene Ontology | maturation of LSU-rRNA | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IBA | Gene Ontology | RNA binding | 1 |
| GO:0003735 | IDA | GOA Database | structural constituent of ribosome | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 2 |
| GO:0003729 | IDA | Gene Ontology | mRNA binding | 3 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:1990904 | IEA | GOA Database | ribonucleoprotein complex | |
| GO:0005840 | IEA | GOA Database | ribosome | |
| GO:0005829 | IDA | GOA Database | cytosol | |
| GO:0005829 | HDA | Gene Ontology | cytosol | 4 |
| GO:0022626 | IDA | GOA Database | cytosolic ribosome | |
| GO:0022626 | HDA | Gene Ontology | cytosolic ribosome | 5 |
| GO:0005774 | IDA | GOA Database | vacuolar membrane | |
| GO:0022625 | IDA | GOA Database | cytosolic large ribosomal subunit | |
| GO:0022625 | HDA IBA | Gene Ontology | cytosolic large ribosomal subunit | 1 6 |
| GO:0042788 | IDA | GOA Database | polysomal ribosome | |
| GO:0005737 | ISM | Gene Ontology | cytoplasm | |
| GO:0005794 | RCA | Gene Ontology | Golgi apparatus | 7 |
| GO:0000325 | HDA | Gene Ontology | plant-type vacuole | 8 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 17.1.2.1.6 | Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL7a |