Gene: AT3G62770

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G62770
  • Transcript Identifier AT3G62770.1
  • Gene Type Coding gene
  • Location Chr3 : 23218858-23221110 : negative

Gene Family Information

  • ID HOM05D001050
  • #Genes/#Species 579/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G62770.1
  • symbol AtATG18a
  • Alias ATG18a,autophagy 18a,PEUP2,PEROXISOME UNUSUAL POSITIONING 2
  • full_name autophagy 18a
  • uniprot Q93VB2

Descriptions

  • Description Transducin/WD40 repeat-like superfamily protein
  • Computational description AtATG18a; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy, leaf senescence, response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) D (TAIR:AT3G56440.1); Has 1516 Blast hits to 1443 proteins in 266 species: Archae - 0; Bacteria - 93; Metazoa - 578; Fungi - 450; Plants - 210; Viruses - 2; Other Eukaryotes - 183 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006497
IBA
Gene Ontologyprotein lipidation1
GO:0044804
IBA
Gene Ontologyautophagy of nucleus1
GO:0000422
IBA
Gene Ontologyautophagy of mitochondrion1
GO:0034497
IBA
Gene Ontologyprotein localization to phagophore assembly site1
GO:0006914
IEA
GOA Databaseautophagy
GO:0006914
IMP
Gene Ontologyautophagy2
GO:0015031
IEA
GOA Databaseprotein transport
GO:0009414
IMP, IEP
Gene Ontologyresponse to water deprivation3 4
GO:0010508
IMP
Gene Ontologypositive regulation of autophagy5
GO:0050832
IEP
Gene Ontologydefense response to fungus6
GO:0009651
IEP
Gene Ontologyresponse to salt stress3
GO:0006970
IEP
Gene Ontologyresponse to osmotic stress3
GO:0006979
IEP
Gene Ontologyresponse to oxidative stress7
GO:0042594
IMP, IEP
Gene Ontologyresponse to starvation2
GO:0010150
IMP
Gene Ontologyleaf senescence2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0080025
IBA
Gene Ontologyphosphatidylinositol-3,5-bisphosphate binding1
GO:0032266
IBA
Gene Ontologyphosphatidylinositol-3-phosphate binding1
GO:0005515
IPI
Gene Ontologyprotein binding6
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0019898
IBA
Gene Ontologyextrinsic component of membrane1
GO:0005774
IEA
GOA Databasevacuolar membrane
GO:0034045
IEA
GOA Databasephagophore assembly site membrane
GO:0034045
IBA
Gene Ontologyphagophore assembly site membrane1
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus6
GO:0005773
IEA
GOA Databasevacuole
GO:0016020
IEA
GOA Databasemembrane
GO:0005829
IDA
IBA
Gene Ontologycytosol1 6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001680 WD40 repeat
IPR036322 WD40-repeat-containing domain superfamily
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
Mapman id Description
19.3.3.5.1.3 Protein homeostasis.autophagy.phagophore expansion.membrane shuttling.ATG9-2-18 membrane-recruiting complex.component ATG18