Gene: AT3G62030

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G62030
  • Transcript Identifier AT3G62030.2
  • Gene Type Coding gene
  • Location Chr3 : 22973004-22975139 : positive

Gene Family Information

  • ID HOM05D000144
  • #Genes/#Species 2569/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G62030.2
  • symbol ROC4
  • Alias CYP20-3,cyclophilin 20-3
  • uniprot P34791

Descriptions

  • Description rotamase CYP 4
  • Computational description rotamase CYP 4 (ROC4); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: in 9 processes; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: cyclophilin 20-2 (TAIR:AT5G13120.1); Has 16567 Blast hits to 16531 proteins in 2704 species: Archae - 108; Bacteria - 6870; Metazoa - 2913; Fungi - 1380; Plants - 1296; Viruses - 4; Other Eukaryotes - 3996 (source: NCBI BLink).
  • Computational description rotamase CYP 4 (ROC4); CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: cyclophilin 20-2 (TAIR:AT5G13120.1); Has 16678 Blast hits to 16640 proteins in 2710 species: Archae - 109; Bacteria - 6942; Metazoa - 2940; Fungi - 1352; Plants - 1326; Viruses - 4; Other Eukaryotes - 4005 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010555
IMP
Gene Ontologyresponse to mannitol1
GO:0019344
IMP
Gene Ontologycysteine biosynthetic process1
GO:0045036
IDA
Gene Ontologyprotein targeting to chloroplast2
GO:0007165
ISS
Gene Ontologysignal transduction3
GO:0009651
IMP
Gene Ontologyresponse to salt stress1
GO:0006457
IBA
GOA Databaseprotein folding
GO:0006457
IEA
Gene Ontologyprotein folding
GO:0000413
IBA
GOA Databaseprotein peptidyl-prolyl isomerization
GO:0000413
IDA
IEA
Gene Ontologyprotein peptidyl-prolyl isomerization4
GO:0000413
IEA
InterProprotein peptidyl-prolyl isomerization
GO:0009737
IEP
Gene Ontologyresponse to abscisic acid5
GO:0006979
IMP
Gene Ontologyresponse to oxidative stress1
GO:0009642
IMP
Gene Ontologyresponse to light intensity1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016853
IEA
GOA Databaseisomerase activity
GO:0003729
IDA
Gene OntologymRNA binding6
GO:0003755
IBA
GOA Databasepeptidyl-prolyl cis-trans isomerase activity
GO:0003755
IDA
IEA
Gene Ontologypeptidyl-prolyl cis-trans isomerase activity4
GO:0003755
IEA
InterPropeptidyl-prolyl cis-trans isomerase activity
GO:0016018
IBA
GOA Databasecyclosporin A binding
GO:0005515
IPI
Gene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
HDA
Gene Ontologycytosol7
GO:0009570
IEA
GOA Databasechloroplast stroma
GO:0009570
IDA, HDA
Gene Ontologychloroplast stroma2 8
GO:0009536
IEA
GOA Databaseplastid
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast9
GO:0005737
IBA
GOA Databasecytoplasm
GO:0009579
HDA
Gene Ontologythylakoid10
GO:0031977
HDA
Gene Ontologythylakoid lumen11
GO:0009941
HDA
Gene Ontologychloroplast envelope12
GO:0009535
HDA
Gene Ontologychloroplast thylakoid membrane13
GO:0022626
HDA
Gene Ontologycytosolic ribosome14
GO:0048046
HDA
Gene Ontologyapoplast15

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR029000 Cyclophilin-like domain superfamily
IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain
Mapman id Description
18.13.1 Protein modification.protein folding.protein folding catalyst (Cyclophilin)