Gene: AT3G61240

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G61240
  • Transcript Identifier AT3G61240.1
  • Gene Type Coding gene
  • Location Chr3 : 22666590-22669154 : positive

Gene Family Information

  • ID HOM05D000250
  • #Genes/#Species 1697/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G61240.1
  • uniprot Q9M2E0

Descriptions

  • Description DEA(D/H)-box RNA helicase family protein
  • Computational description DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G45810.1); Has 53038 Blast hits to 46572 proteins in 3157 species: Archae - 705; Bacteria - 22269; Metazoa - 8742; Fungi - 5746; Plants - 2904; Viruses - 84; Other Eukaryotes - 12588 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0051028
IEA
GOA DatabasemRNA transport
GO:0006417
IEA
GOA Databaseregulation of translation
GO:0034063
IBA
Gene Ontologystress granule assembly1
GO:0033962
IBA
Gene OntologyP-body assembly1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003724
IEA
Gene OntologyRNA helicase activity
GO:0003729
IDA, HDA
IBA
Gene OntologymRNA binding1 2 3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0000932
IEA
GOA DatabaseP-body
GO:0000932
IBA
Gene OntologyP-body1
GO:0010494
IBA
Gene Ontologycytoplasmic stress granule1
GO:0005829
RCA
Gene Ontologycytosol4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
16.4.2.6 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA helicase (DHH1/DDX6)