Gene: AT3G56860

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G56860
  • Transcript Identifier AT3G56860.3
  • Gene Type Coding gene
  • Location Chr3 : 21050708-21052144 : negative

Gene Family Information

  • ID HOM05D000845
  • #Genes/#Species 706/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G56860.3
  • symbol UBA2A
  • uniprot Q9LES2

Descriptions

  • Description UBP1-associated protein 2A
  • Computational description UBP1-associated protein 2A (UBA2A); FUNCTIONS IN: RNA binding, AU-rich element binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G41060.2); Has 31187 Blast hits to 20847 proteins in 859 species: Archae - 47; Bacteria - 1373; Metazoa - 14793; Fungi - 3614; Plants - 4555; Viruses - 445; Other Eukaryotes - 6360 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010150
IMP
Gene Ontologyleaf senescence1
GO:0051028
ISO
PLAZA Integrative OrthologymRNA transport Os01g0265800
GO:0009693
IMP
Gene Ontologyethylene biosynthetic process1
GO:0008219
IMP
Gene Ontologycell death1
GO:0006952
IMP
Gene Ontologydefense response1
GO:0009738
TAS
Gene Ontologyabscisic acid-activated signaling pathway2
GO:0048255
NAS
Gene OntologymRNA stabilization3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003729
IDA, HDA
Gene OntologymRNA binding4 5
GO:0035925
IDA
Gene OntologymRNA 3'-UTR AU-rich region binding3
GO:0005515
IPI
Gene Ontologyprotein binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
GOA Databasecytosol
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
Gene Ontologynucleus3
GO:0005737
ISM
Gene Ontologycytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
Mapman id Description
35.1 not assigned.annotated