Gene: AT3G56440

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G56440
  • Transcript Identifier AT3G56440.2
  • Gene Type Coding gene
  • Location Chr3 : 20926874-20928585 : positive

Gene Family Information

  • ID HOM05D001050
  • #Genes/#Species 579/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G56440.2
  • symbol ATG18D
  • Alias ATATG18D,homolog of yeast autophagy 18 (ATG18) D
  • full_name homolog of yeast autophagy 18 (ATG18) D
  • uniprot Q0WPK3

Descriptions

  • Description yeast autophagy 18 D-like protein
  • Computational description homolog of yeast autophagy 18 (ATG18) D (ATG18D); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18C (TAIR:AT2G40810.2); Has 1451 Blast hits to 1383 proteins in 243 species: Archae - 0; Bacteria - 34; Metazoa - 579; Fungi - 434; Plants - 212; Viruses - 2; Other Eukaryotes - 190 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000422
IBA
Gene Ontologyautophagy of mitochondrion1
GO:0015031
IEA
GOA Databaseprotein transport
GO:0006914
IEA
GOA Databaseautophagy
GO:0044804
IBA
Gene Ontologyautophagy of nucleus1
GO:0006497
IBA
Gene Ontologyprotein lipidation1
GO:0034497
IBA
Gene Ontologyprotein localization to phagophore assembly site1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0032266
IBA
Gene Ontologyphosphatidylinositol-3-phosphate binding1
GO:0080025
IBA
Gene Ontologyphosphatidylinositol-3,5-bisphosphate binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0005773
IEA
GOA Databasevacuole
GO:0034045
IEA
GOA Databasephagophore assembly site membrane
GO:0034045
IBA
Gene Ontologyphagophore assembly site membrane1
GO:0005774
IEA
GOA Databasevacuolar membrane
GO:0005634
ISM
Gene Ontologynucleus
GO:0005829
IBA
Gene Ontologycytosol1
GO:0019898
IBA
Gene Ontologyextrinsic component of membrane1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001680 WD40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR036322 WD40-repeat-containing domain superfamily
Mapman id Description
19.3.3.5.1.3 Protein homeostasis.autophagy.phagophore expansion.membrane shuttling.ATG9-2-18 membrane-recruiting complex.component ATG18