Gene: AT3G55770
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G55770
- Transcript Identifier AT3G55770.1
- Gene Type Coding gene
- Location Chr3 : 20703799-20705115 : positive
Gene Family Information
- ID HOM05D000612
- #Genes/#Species 928/98
- Phylogenetic origin
- ID ORTHO05D000461
- #Genes/#Species 906/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G55770.1
- symbol WLIM2b
- uniprot Q9M047
Descriptions
- Description GATA type zinc finger transcription factor family protein
- Computational description GATA type zinc finger transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G39900.1); Has 5098 Blast hits to 3614 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 4118; Fungi - 82; Plants - 503; Viruses - 0; Other Eukaryotes - 395 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0051017 | IDA IBA | Gene Ontology | actin filament bundle assembly | 1 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0051015 | IDA IBA | Gene Ontology | actin filament binding | 1 2 |
| GO:0003729 | IDA | GOA Database | mRNA binding | |
| GO:0003729 | HDA | Gene Ontology | mRNA binding | 3 |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0003779 | IEA | GOA Database | actin binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | ISM | Gene Ontology | cytoplasm | |
| GO:0015629 | IDA | Gene Ontology | actin cytoskeleton | 1 |
| GO:0005886 | IBA | Gene Ontology | plasma membrane | 2 |
| GO:0005856 | IEA | GOA Database | cytoskeleton |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001781 | Zinc finger, LIM-type |
| Mapman id | Description |
|---|---|
| 15.5.39 | RNA biosynthesis.transcriptional regulation.transcription factor (LIM) |