Gene: AT3G55620

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G55620
  • Transcript Identifier AT3G55620.1
  • Gene Type Coding gene
  • Location Chr3 : 20634581-20636312 : positive

Gene Family Information

  • ID HOM05D002836
  • #Genes/#Species 244/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G55620.1
  • symbol eIF6A
  • Alias emb1624,embryo defective 1624
  • full_name eukaryotic initiation facor 6A
  • uniprot Q9M060

Descriptions

  • Description Translation initiation factor IF6
  • Computational description embryo defective 1624 (emb1624); FUNCTIONS IN: ribosome binding, translation initiation factor activity; INVOLVED IN: translational initiation, embryo development ending in seed dormancy; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF6 (InterPro:IPR002769); BEST Arabidopsis thaliana protein match is: Translation initiation factor IF6 (TAIR:AT2G39820.1); Has 941 Blast hits to 941 proteins in 349 species: Archae - 255; Bacteria - 0; Metazoa - 235; Fungi - 146; Plants - 134; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000470
IBA
Gene Ontologymaturation of LSU-rRNA1
GO:0042256
IEA
GOA Databasemature ribosome assembly
GO:0042256
IEA
InterPromature ribosome assembly
GO:0042254
IEA
GOA Databaseribosome biogenesis
GO:0006412
IEA
GOA Databasetranslation
GO:0006413
IEA
GOA Databasetranslational initiation
GO:0042273
IEA
GOA Databaseribosomal large subunit biogenesis
GO:0009793
IMP
NAS
Gene Ontologyembryo development ending in seed dormancy2
GO:1902626
IBA
Gene Ontologyassembly of large subunit precursor of preribosome1
GO:0000054
IBA
Gene Ontologyribosomal subunit export from nucleus1
GO:0000460
IBA
Gene Ontologymaturation of 5.8S rRNA1
GO:0071215
IEP
Gene Ontologycellular response to abscisic acid stimulus2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043022
IEA
Gene Ontologyribosome binding
GO:0043022
IEA
InterProribosome binding
GO:0043023
IEA
GOA Databaseribosomal large subunit binding
GO:0043023
IBA
Gene Ontologyribosomal large subunit binding1
GO:0003743
IEA
GOA Databasetranslation initiation factor activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
Gene Ontologynucleus2
GO:0005730
IDA
IEA
GOA Databasenucleolus
GO:0005730
HDA
IBA
Gene Ontologynucleolus1 3
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005829
IDA, HDA
IBA
Gene Ontologycytosol1 2 4
GO:0030687
IBA
Gene Ontologypreribosome, large subunit precursor1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002769 Translation initiation factor IF6
Mapman id Description
17.1.2.2.3.8 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.60S ribosomal subunit cytoplasmic maturation.ribosome assembly factor (eIF6)