Gene: AT3G54890

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G54890
  • Transcript Identifier AT3G54890.1
  • Gene Type Coding gene
  • Location Chr3 : 20339706-20340922 : negative

Gene Family Information

  • ID HOM05D000133
  • #Genes/#Species 2666/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G54890.1
  • symbol LHCA1
  • full_name photosystem I light harvesting complex gene 1
  • uniprot Q01667

Descriptions

  • Description chlorophyll a-b binding protein 6
  • Computational description photosystem I light harvesting complex gene 1 (LHCA1); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, photosynthesis, light harvesting in photosystem I, response to far red light, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light harvesting complex photosystem II (TAIR:AT3G08940.2); Has 2394 Blast hits to 2306 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1992; Viruses - 0; Other Eukaryotes - 399 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015979
IEA
GOA Databasephotosynthesis
GO:0018298
IEA
GOA Databaseprotein-chromophore linkage
GO:0009765
IEA
Gene Ontologyphotosynthesis, light harvesting
GO:0009765
IEA
InterProphotosynthesis, light harvesting
GO:0009768
IDA, IMP
IBA
Gene Ontologyphotosynthesis, light harvesting in photosystem I1 2 3
GO:0009409
IEP
Gene Ontologyresponse to cold4
GO:0009644
IEP
Gene Ontologyresponse to high light intensity4
GO:0009645
IEP
Gene Ontologyresponse to low light intensity stimulus4
GO:0009416
IBA
Gene Ontologyresponse to light stimulus3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0019904
IPI
GOA Databaseprotein domain specific binding
GO:0016168
IEA
GOA Databasechlorophyll binding
GO:0016168
ISS
Gene Ontologychlorophyll binding
GO:0005515
IPI
Gene Ontologyprotein binding5
GO:0003729
IDA
Gene OntologymRNA binding6

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast7
GO:0009535
IEA
GOA Databasechloroplast thylakoid membrane
GO:0009535
IDA, HDA
Gene Ontologychloroplast thylakoid membrane8 9
GO:0010287
IDA
GOA Databaseplastoglobule
GO:0010287
HDA
Gene Ontologyplastoglobule10
GO:0009941
IDA
GOA Databasechloroplast envelope
GO:0009941
HDA
Gene Ontologychloroplast envelope11
GO:0009579
IDA
IEA
GOA Databasethylakoid
GO:0009579
HDA
Gene Ontologythylakoid12
GO:0009534
IDA
GOA Databasechloroplast thylakoid
GO:0009534
HDA
Gene Ontologychloroplast thylakoid13
GO:0009522
IEA
GOA Databasephotosystem I
GO:0009536
IEA
GOA Databaseplastid
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane
GO:0016020
IEA
InterPromembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR023329 Chlorophyll a/b binding domain superfamily
IPR022796 Chlorophyll A-B binding protein
IPR001344 Chlorophyll A-B binding protein, plant and chromista
Mapman id Description
1.1.4.1.1 Photosynthesis.photophosphorylation.photosystem I.LHC-I complex.component LHCa1