Gene: AT3G53600
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G53600
- Transcript Identifier AT3G53600.1
- Gene Type Coding gene
- Location Chr3 : 19875532-19876059 : positive
Gene Family Information
- ID HOM05D000174
- #Genes/#Species 2155/94
- Phylogenetic origin
- ID ORTHO05D000795
- #Genes/#Species 608/86
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G53600.1
- uniprot Q9LFG0
Descriptions
- Description C2H2-type zinc finger family protein
- Computational description C2H2-type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT2G37430.1); Has 959 Blast hits to 927 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 2; Plants - 801; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009414 | IEP | Gene Ontology | response to water deprivation | 1 |
| GO:0010200 | IEP | GOA Database | response to chitin | |
| GO:0010200 | IBA | Gene Ontology | response to chitin | 2 |
| GO:0006950 | IBA | Gene Ontology | response to stress | 2 |
| GO:1902584 | IMP | Gene Ontology | positive regulation of response to water deprivation | 1 |
| GO:1902074 | IEP | Gene Ontology | response to salt | 1 |
| GO:0042631 | IMP | Gene Ontology | cellular response to water deprivation | 1 |
| GO:0010224 | IEP | Gene Ontology | response to UV-B | 1 |
| GO:0009409 | IEP | Gene Ontology | response to cold | 1 |
| GO:0006970 | IEP | Gene Ontology | response to osmotic stress | 1 |
| GO:2000022 | IMP | Gene Ontology | regulation of jasmonic acid mediated signaling pathway | 3 |
| GO:0009753 | IEP | Gene Ontology | response to jasmonic acid | 3 |
| GO:0009611 | IEP | Gene Ontology | response to wounding | 3 |
| GO:0006355 | IMP TAS | Gene Ontology | regulation of transcription, DNA-templated | 3 4 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0003700 | ISS | Gene Ontology | DNA-binding transcription factor activity | 4 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.15 | RNA biosynthesis.transcriptional regulation.transcription factor (C2H2-ZF) |