Gene: AT3G52850

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G52850
  • Transcript Identifier AT3G52850.1
  • Gene Type Coding gene
  • Location Chr3 : 19587999-19591690 : positive

Gene Family Information

  • ID HOM05D000969
  • #Genes/#Species 618/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G52850.1
  • symbol VSR1
  • Alias ATELP1,ATELP,ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN,ATVSR1,BP-80,BP80,BP80-1%3B1,binding protein of 80 kDa 1%3B1,BP80B,GFS1,Green fluorescent seed 1
  • uniprot P93026

Descriptions

  • Description vacuolar sorting receptor homolog 1
  • Computational description vacuolar sorting receptor homolog 1 (VSR1); FUNCTIONS IN: amino-terminal vacuolar sorting propeptide binding; INVOLVED IN: Golgi to vacuole transport, vacuolar transport, protein targeting to vacuole; LOCATED IN: trans-Golgi network, Golgi apparatus, plasma membrane, integral to plasma membrane, Golgi transport complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF calcium-binding (InterPro:IPR013091), Growth factor, receptor (InterPro:IPR009030); BEST Arabidopsis thaliana protein match is: VACUOLAR SORTING RECEPTOR 2 (TAIR:AT2G30290.2); Has 12319 Blast hits to 5607 proteins in 222 species: Archae - 0; Bacteria - 78; Metazoa - 11101; Fungi - 9; Plants - 529; Viruses - 0; Other Eukaryotes - 602 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
GOA Databaseprotein ubiquitination
GO:0006896
IDA
ISS, IBA
Gene OntologyGolgi to vacuole transport1 2 3
GO:0006511
IBA
Gene Ontologyubiquitin-dependent protein catabolic process3
GO:0006623
IMP, IGI
IBA
TAS
Gene Ontologyprotein targeting to vacuole3 4 5 6
GO:0015031
IEA
GOA Databaseprotein transport
GO:0007034
IMP
Gene Ontologyvacuolar transport7

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0061630
IBA
Gene Ontologyubiquitin protein ligase activity3
GO:0005509
IEA
Gene Ontologycalcium ion binding
GO:0005509
IEA
InterProcalcium ion binding
GO:0009940
IDA
Gene Ontologyamino-terminal vacuolar sorting propeptide binding4
GO:0005515
IPI
Gene Ontologyprotein binding8
GO:0010209
IPI
Gene Ontologyvacuolar sorting signal binding9

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005802
IDA
IBA
TAS
Gene Ontologytrans-Golgi network3 4 9
GO:0016020
IEA
GOA Databasemembrane
GO:0016020
IBA
Gene Ontologymembrane3
GO:0017119
IPI
IBA
Gene OntologyGolgi transport complex3 10
GO:0005768
IBA
Gene Ontologyendosome3
GO:0005622
ISS
Gene Ontologyintracellular anatomical structure1
GO:0030665
IEA
GOA Databaseclathrin-coated vesicle membrane
GO:0000139
IEA
GOA DatabaseGolgi membrane
GO:0005783
IDA
GOA Databaseendoplasmic reticulum
GO:0005783
HDA
Gene Ontologyendoplasmic reticulum11
GO:0005794
IEA
GOA DatabaseGolgi apparatus
GO:0005794
IDA, HDA
Gene OntologyGolgi apparatus4 12
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0031410
IEA
GOA Databasecytoplasmic vesicle
GO:0005576
ISM
Gene Ontologyextracellular region
GO:0005886
IDA
Gene Ontologyplasma membrane13
GO:0005770
IDA
Gene Ontologylate endosome9
GO:0005829
HDA
Gene Ontologycytosol14

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001881 EGF-like calcium-binding domain
IPR003137 PA domain
Mapman id Description
22.3.3.1 Vesicle trafficking.post-Golgi trafficking.vacuolar protein sorting.lytic vacuole sorting receptor (VSR)