Gene: AT3G50970
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G50970
- Transcript Identifier AT3G50970.1
- Gene Type Coding gene
- Location Chr3 : 18940825-18941406 : positive
Gene Family Information
- ID HOM05D029583
- #Genes/#Species 4/3
- Phylogenetic origin
- ID ORTHO05D026787
- #Genes/#Species 4/3
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT3G50970.1
- symbol LTI30
- Alias XERO2
- full_name LOW TEMPERATURE-INDUCED 30
- uniprot P42758
Descriptions
- Description dehydrin family protein
- Computational description LOW TEMPERATURE-INDUCED 30 (LTI30); CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: dehydrin xero 1 (TAIR:AT3G50980.1); Has 2604 Blast hits to 1055 proteins in 149 species: Archae - 0; Bacteria - 4; Metazoa - 72; Fungi - 7; Plants - 2511; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009737 | IEP IBA | Gene Ontology | response to abscisic acid | 1 2 |
| GO:0009415 | IEA | GOA Database | response to water | |
| GO:0009415 | IEA | InterPro | response to water | |
| GO:0009414 | IEP IBA | Gene Ontology | response to water deprivation | 2 3 |
| GO:0009631 | IGI IBA | Gene Ontology | cold acclimation | 2 4 |
| GO:0050832 | IEP | Gene Ontology | defense response to fungus | 5 |
| GO:0009409 | IEP | Gene Ontology | response to cold | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005507 | IDA | GOA Database | copper ion binding | |
| GO:0016151 | IDA | GOA Database | nickel cation binding | |
| GO:0008270 | IDA | GOA Database | zinc ion binding | |
| GO:0050897 | IDA | GOA Database | cobalt ion binding | |
| GO:0003674 | ND | Gene Ontology | molecular_function |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | IDA | GOA Database | cytosol | |
| GO:0005829 | HDA IBA | Gene Ontology | cytosol | 2 6 |
| GO:0016020 | IDA | Gene Ontology | membrane | 4 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR000167 | Dehydrin |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |