Gene: AT3G50410
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G50410
- Transcript Identifier AT3G50410.1
- Gene Type Coding gene
- Location Chr3 : 18709872-18710633 : positive
Gene Family Information
- ID HOM05D000110
- #Genes/#Species 3051/96
- Phylogenetic origin
- ID ORTHO05D000024
- #Genes/#Species 3751/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G50410.1
- symbol OBP1
- uniprot Q39088
Descriptions
- Description OBF binding protein 1
- Computational description OBF binding protein 1 (OBP1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT5G66940.1); Has 1129 Blast hits to 1124 proteins in 68 species: Archae - 0; Bacteria - 9; Metazoa - 17; Fungi - 6; Plants - 1084; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0045787 | IMP | Gene Ontology | positive regulation of cell cycle | 1 |
| GO:0042545 | IMP | Gene Ontology | cell wall modification | 1 |
| GO:0045893 | TAS | Gene Ontology | positive regulation of transcription, DNA-templated | 2 |
| GO:0009751 | IEP | Gene Ontology | response to salicylic acid | 2 |
| GO:0009733 | IEP | Gene Ontology | response to auxin | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008270 | IDA | Gene Ontology | zinc ion binding | 3 |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IDA | Gene Ontology | DNA binding | 4 |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 4 |
| GO:0000976 | IPI | Gene Ontology | transcription cis-regulatory region binding | 5 |
| GO:0003700 | ISS | Gene Ontology | DNA-binding transcription factor activity | 6 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR003851 | Zinc finger, Dof-type |
| Mapman id | Description |
|---|---|
| 15.5.1.5 | RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (DOF) |