Gene: AT3G48010

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G48010
  • Transcript Identifier AT3G48010.1
  • Gene Type Coding gene
  • Location Chr3 : 17721335-17724028 : negative

Gene Family Information

  • ID HOM05D000122
  • #Genes/#Species 2793/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G48010.1
  • symbol CNGC16
  • Alias ATCNGC16,CYCLIC NUCLEOTIDE-GATED CHANNEL 16
  • uniprot Q9SU64

Descriptions

  • Description cyclic nucleotide-gated channel 16
  • Computational description cyclic nucleotide-gated channel 16 (CNGC16); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 18 (TAIR:AT5G14870.1); Has 3330 Blast hits to 3084 proteins in 251 species: Archae - 0; Bacteria - 33; Metazoa - 1612; Fungi - 37; Plants - 1021; Viruses - 0; Other Eukaryotes - 627 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034220
IEA
GOA Databaseion transmembrane transport
GO:0006811
IEA
GOA Databaseion transport
GO:0006811
IEA
InterProion transport
GO:0055085
IEA
GOA Databasetransmembrane transport
GO:0055085
IEA
InterProtransmembrane transport

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005216
IEA
Gene Ontologyion channel activity
GO:0005216
IEA
InterProion channel activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0030553
IEA
GOA DatabasecGMP binding
GO:0030552
IEA
GOA DatabasecAMP binding
GO:0005516
IEA
GOA Databasecalmodulin binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
ISM
Gene Ontologymitochondrion
GO:0005886
IEA
GOA Databaseplasma membrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane
GO:0016020
IEA
InterPromembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000595 Cyclic nucleotide-binding domain
IPR014710 RmlC-like jelly roll fold
IPR005821 Ion transport domain
IPR018490 Cyclic nucleotide-binding-like
Mapman id Description
24.3.2.4 Solute transport.channels.VIC superfamily.cyclic nucleotide-gated cation channel (CNGC)