Gene: AT3G46510

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G46510
  • Transcript Identifier AT3G46510.1
  • Gene Type Coding gene
  • Location Chr3 : 17124106-17126539 : negative

Gene Family Information

  • ID HOM05D000215
  • #Genes/#Species 1875/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G46510.1
  • symbol PUB13
  • Alias ATPUB13,ARABIDOPSIS THALIANA PLANT U-BOX 13
  • uniprot Q9SNC6

Descriptions

  • Description plant U-box 13
  • Computational description plant U-box 13 (PUB13); CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PLANT U-BOX 12 (TAIR:AT2G28830.1); Has 8308 Blast hits to 5676 proteins in 314 species: Archae - 6; Bacteria - 52; Metazoa - 2498; Fungi - 809; Plants - 4013; Viruses - 3; Other Eukaryotes - 927 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0050777
IGI
Gene Ontologynegative regulation of immune response1
GO:0031348
ISO
PLAZA Integrative Orthologynegative regulation of defense response Os12g0570000
GO:0043069
ISO
PLAZA Integrative Orthologynegative regulation of programmed cell death Os12g0570000
GO:0048586
ISO
PLAZA Integrative Orthologyregulation of long-day photoperiodism, flowering Os12g0570000
GO:0007166
IEA
Gene Ontologycell surface receptor signaling pathway
GO:0007166
IEA
InterProcell surface receptor signaling pathway
GO:0016567
IDA
IEA
Gene Ontologyprotein ubiquitination2
GO:0016567
IEA
InterProprotein ubiquitination
GO:2000028
IMP
Gene Ontologyregulation of photoperiodism, flowering3
GO:0043066
IMP
Gene Ontologynegative regulation of apoptotic process3
GO:0042742
IGI
Gene Ontologydefense response to bacterium4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding5
GO:0005515
IEA
InterProprotein binding
GO:0004842
IEA
GOA Databaseubiquitin-protein transferase activity
GO:0004842
IDA
Gene Ontologyubiquitin-protein transferase activity2
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0070696
IPI
Gene Ontologytransmembrane receptor protein serine/threonine kinase binding6

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM, IBA
Gene Ontologynucleus6 7
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
IBA
Gene Ontologycytoplasm6 7
GO:0005829
IDA
Gene Ontologycytosol6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR003613 U box domain
IPR016024 Armadillo-type fold
IPR000225 Armadillo
IPR011989 Armadillo-like helical
IPR036537 Adaptor protein Cbl, N-terminal domain superfamily
Mapman id Description
19.2.2.1.4.2.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.U-Box E3 ligase activities.group-II ligase