Gene: AT3G42830
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G42830
- Transcript Identifier AT3G42830.1
- Gene Type Coding gene
- Location Chr3 : 14929714-14930678 : negative
Gene Family Information
- ID HOM05D001662
- #Genes/#Species 389/99
- Phylogenetic origin
- ID ORTHO05D002900
- #Genes/#Species 255/97
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G42830.1
- uniprot Q9M2B0
Descriptions
- Description RING/U-box superfamily protein
- Computational description RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING-box 1 (TAIR:AT5G20570.1); Has 1105 Blast hits to 1103 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 490; Fungi - 231; Plants - 178; Viruses - 3; Other Eukaryotes - 203 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016567 | IBA IEA | Gene Ontology | protein ubiquitination | 1 |
| GO:0006511 | IBA TAS | Gene Ontology | ubiquitin-dependent protein catabolic process | 1 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008270 | IEA | Gene Ontology | zinc ion binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0004842 | TAS | Gene Ontology | ubiquitin-protein transferase activity | 2 |
| GO:0097602 | IBA | Gene Ontology | cullin family protein binding | 1 |
| GO:0061630 | IBA | Gene Ontology | ubiquitin protein ligase activity | 1 |
| GO:0046872 | IEA | GOA Database | metal ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM, IBA | Gene Ontology | nucleus | 1 |
| GO:0000151 | TAS | Gene Ontology | ubiquitin ligase complex | 2 |
| GO:0031461 | IBA | Gene Ontology | cullin-RING ubiquitin ligase complex | 1 |
| GO:0005737 | IEA | GOA Database | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 19.2.2.3.4.1 | Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.RUB/NEDD8 conjugation (neddylation).RUB ligase E3 activities.RUB ligase E3 protein (RBX1) |
| 19.2.2.8.1.3 | Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes.UBQ-E2-recruiting component RBX1 |