Gene: AT3G28490

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G28490
  • Transcript Identifier AT3G28490.1
  • Gene Type Coding gene
  • Location Chr3 : 10679150-10680654 : negative

Gene Family Information

  • ID HOM05D000373
  • #Genes/#Species 1301/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G28490.1
  • uniprot F4J0A8

Descriptions

  • Description Oxoglutarate/iron-dependent oxygenase
  • Computational description Oxoglutarate/iron-dependent oxygenase; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, L-ascorbic acid binding; INVOLVED IN: oxidation reduction, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; LOCATED IN: endomembrane system; EXPRESSED IN: petal, sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123), Metridin-like ShK toxin (InterPro:IPR003582); BEST Arabidopsis thaliana protein match is: Oxoglutarate/iron-dependent oxygenase (TAIR:AT3G28480.1); Has 2477 Blast hits to 2439 proteins in 330 species: Archae - 0; Bacteria - 383; Metazoa - 1060; Fungi - 71; Plants - 412; Viruses - 15; Other Eukaryotes - 536 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0018401
IBA
Gene Ontologypeptidyl-proline hydroxylation to 4-hydroxy-L-proline1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0031418
IEA
Gene OntologyL-ascorbic acid binding
GO:0031418
IEA
InterProL-ascorbic acid binding
GO:0016705
IEA
GOA Databaseoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016705
IEA
InterProoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0005506
IEA
Gene Ontologyiron ion binding
GO:0005506
IEA
InterProiron ion binding
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0051213
IEA
GOA Databasedioxygenase activity
GO:0004656
IEA
GOA Databaseprocollagen-proline 4-dioxygenase activity
GO:0004656
IBA
Gene Ontologyprocollagen-proline 4-dioxygenase activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005783
IEA
GOA Databaseendoplasmic reticulum
GO:0005783
IBA
Gene Ontologyendoplasmic reticulum1
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0005789
IEA
GOA Databaseendoplasmic reticulum membrane
GO:0005576
ISM
Gene Ontologyextracellular region

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003582 ShKT domain
IPR006620 Prolyl 4-hydroxylase, alpha subunit
IPR044862 Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain
IPR045054 Prolyl 4-hydroxylase
Mapman id Description
18.9.1 Protein modification.hydroxylation.prolyl hydroxylase