Gene: AT3G28480

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G28480
  • Transcript Identifier AT3G28480.1
  • Gene Type Coding gene
  • Location Chr3 : 10676266-10678262 : negative

Gene Family Information

  • ID HOM05D000373
  • #Genes/#Species 1301/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G28480.1
  • uniprot Q8L970

Descriptions

  • Description Oxoglutarate/iron-dependent oxygenase
  • Computational description Oxoglutarate/iron-dependent oxygenase; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, L-ascorbic acid binding, iron ion binding; INVOLVED IN: oxidation reduction, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123), Metridin-like ShK toxin (InterPro:IPR003582); BEST Arabidopsis thaliana protein match is: Oxoglutarate/iron-dependent oxygenase (TAIR:AT3G28490.1); Has 2540 Blast hits to 2497 proteins in 339 species: Archae - 0; Bacteria - 391; Metazoa - 1089; Fungi - 70; Plants - 415; Viruses - 17; Other Eukaryotes - 558 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0018401
IBA
GOA Databasepeptidyl-proline hydroxylation to 4-hydroxy-L-proline

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0031418
IEA
Gene OntologyL-ascorbic acid binding
GO:0031418
IEA
InterProL-ascorbic acid binding
GO:0016705
IEA
GOA Databaseoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016705
IEA
InterProoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0005506
IEA
Gene Ontologyiron ion binding
GO:0005506
IEA
InterProiron ion binding
GO:0004656
IBA
GOA Databaseprocollagen-proline 4-dioxygenase activity
GO:0004656
IEA
Gene Ontologyprocollagen-proline 4-dioxygenase activity
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0051213
IEA
GOA Databasedioxygenase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005783
IBA
IEA
GOA Databaseendoplasmic reticulum
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0005789
IEA
GOA Databaseendoplasmic reticulum membrane
GO:0000137
HDA
Gene OntologyGolgi cis cisterna1
GO:0005829
HDA
Gene Ontologycytosol2
GO:0005802
HDA
Gene Ontologytrans-Golgi network3
GO:0005768
HDA
Gene Ontologyendosome3
GO:0000325
HDA
Gene Ontologyplant-type vacuole4
GO:0005794
HDA
Gene OntologyGolgi apparatus5
GO:0005576
ISM
Gene Ontologyextracellular region

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044862 Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain
IPR045054 Prolyl 4-hydroxylase
IPR003582 ShKT domain
IPR006620 Prolyl 4-hydroxylase, alpha subunit
Mapman id Description
18.9.1 Protein modification.hydroxylation.prolyl hydroxylase