Gene: AT3G25500
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G25500
- Transcript Identifier AT3G25500.1
- Gene Type Coding gene
- Location Chr3 : 9251320-9254826 : negative
Gene Family Information
- ID HOM05D000359
- #Genes/#Species 1330/98
- Phylogenetic origin
- ID ORTHO05D000251
- #Genes/#Species 1267/98
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT3G25500.1
- symbol AFH1
- Alias AHF1,ATFH1,ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1,FH1,FORMIN HOMOLOGY 1
- uniprot Q9SE97
Descriptions
- Description formin homology 1
- Computational description formin homology 1 (AFH1); FUNCTIONS IN: actin binding, protein binding, actin filament binding; INVOLVED IN: actin cytoskeleton organization; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: Actin-binding FH2 (formin homology 2) family protein (TAIR:AT2G43800.1); Has 17339 Blast hits to 10806 proteins in 665 species: Archae - 8; Bacteria - 1434; Metazoa - 6069; Fungi - 2556; Plants - 3390; Viruses - 718; Other Eukaryotes - 3164 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030036 | IDA TAS | Gene Ontology | actin cytoskeleton organization | 1 2 |
| GO:0045010 | IDA | Gene Ontology | actin nucleation | 3 |
| GO:0051016 | IDA | Gene Ontology | barbed-end actin filament capping | 3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IPI | Gene Ontology | protein binding | 1 |
| GO:0003779 | ISS | Gene Ontology | actin binding | 4 |
| GO:0051015 | IDA | Gene Ontology | actin filament binding | 5 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0016020 | IDA | Gene Ontology | membrane | 1 |
| GO:0005886 | IDA, HDA | Gene Ontology | plasma membrane | 6 7 |
| GO:0005618 | IDA | Gene Ontology | cell wall | 7 |
| GO:0009506 | IDA | Gene Ontology | plasmodesma | 8 |
| GO:0016021 | IEA | GOA Database | integral component of membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 20.2.2.6.1 | Cytoskeleton organisation.microfilament network.actin polymerisation.formin actin filament elongation factor activities.group-I formin |