Gene: AT3G23290
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G23290
- Transcript Identifier AT3G23290.2
- Gene Type Coding gene
- Location Chr3 : 8326958-8328010 : positive
Gene Family Information
- ID HOM05D000378
- #Genes/#Species 1291/95
- Phylogenetic origin
- ID ORTHO05D000256
- #Genes/#Species 1259/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT3G23290.2
- symbol LSH4
- full_name LIGHT SENSITIVE HYPOCOTYLS 4
- uniprot Q9LW68
Descriptions
- Description LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
- Computational description LIGHT SENSITIVE HYPOCOTYLS 4 (LSH4); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT2G31160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009299 | ISS, IBA | Gene Ontology | mRNA transcription | 1 |
| GO:0090698 | IMP | Gene Ontology | post-embryonic plant morphogenesis | 2 |
| GO:0009416 | IBA | Gene Ontology | response to light stimulus | 1 |
| GO:0080050 | ISO | PLAZA Integrative Orthology | regulation of seed development | Os02g0811000 |
| GO:0045892 | ISO | PLAZA Integrative Orthology | negative regulation of transcription, DNA-templated | Os02g0811000 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0042803 | ISO | PLAZA Integrative Orthology | protein homodimerization activity | Os02g0811000 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005739 | ISM | Gene Ontology | mitochondrion | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA IBA | Gene Ontology | nucleus | 1 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |