Gene: AT3G22170
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G22170
- Transcript Identifier AT3G22170.2
- Gene Type Coding gene
- Location Chr3 : 7822359-7825414 : negative
Gene Family Information
- ID HOM05D000045
- #Genes/#Species 4772/90
- Phylogenetic origin
- ID ORTHO05D000067
- #Genes/#Species 2550/87
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G22170.2
- symbol FHY3
- Alias CPD45,CHLOROPLAST DIVISION MUTANT 45
- uniprot Q9LIE5
Descriptions
- Description far-red elongated hypocotyls 3
- Computational description far-red elongated hypocotyls 3 (FHY3); CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), Glycoside hydrolase, family 10 (InterPro:IPR001000); BEST Arabidopsis thaliana protein match is: FRS (FAR1 Related Sequences) transcription factor family (TAIR:AT4G15090.1); Has 1557 Blast hits to 1407 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 102; Plants - 1437; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
- Computational description far-red elongated hypocotyls 3 (FHY3); CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), Glycoside hydrolase, family 10 (InterPro:IPR001000); BEST Arabidopsis thaliana protein match is: FRS (FAR1 Related Sequences) transcription factor family (TAIR:AT4G15090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0010017 | IEA | GOA Database | red or far-red light signaling pathway | |
| GO:0010017 | IMP | Gene Ontology | red or far-red light signaling pathway | 1 |
| GO:0009585 | IEA | GOA Database | red, far-red light phototransduction | |
| GO:0009585 | IMP | Gene Ontology | red, far-red light phototransduction | 2 |
| GO:0045944 | IEA | GOA Database | positive regulation of transcription by RNA polymerase II | |
| GO:1900056 | IMP | Gene Ontology | negative regulation of leaf senescence | 3 |
| GO:0042753 | IMP, IEP | Gene Ontology | positive regulation of circadian rhythm | 4 5 |
| GO:0045893 | IDA | Gene Ontology | positive regulation of transcription, DNA-templated | 1 |
| GO:0010218 | IMP | Gene Ontology | response to far red light | 1 |
| GO:0007623 | IMP | Gene Ontology | circadian rhythm | 6 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0001228 | IDA | Gene Ontology | DNA-binding transcription activator activity, RNA polymerase II-specific | 5 |
| GO:0008270 | IEA | Gene Ontology | zinc ion binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 7 |
| GO:0003700 | IDA | Gene Ontology | DNA-binding transcription factor activity | 8 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |