Gene: AT3G20520

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G20520
  • Transcript Identifier AT3G20520.1
  • Gene Type Coding gene
  • Location Chr3 : 7162845-7165742 : positive

Gene Family Information

  • ID HOM05D001160
  • #Genes/#Species 532/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G20520.1
  • symbol SVL3
  • Alias GDPDL5,Glycerophosphodiester phosphodiesterase (GDPD) like 5
  • uniprot F4JEQ1

Descriptions

  • Description SHV3-like 3
  • Computational description SHV3-like 3 (SVL3); FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterase family protein (TAIR:AT4G26690.1); Has 1100 Blast hits to 834 proteins in 287 species: Archae - 0; Bacteria - 734; Metazoa - 17; Fungi - 0; Plants - 308; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006629
IEA
Gene Ontologylipid metabolic process
GO:0006629
IEA
InterProlipid metabolic process
GO:0006071
IEA
GOA Databaseglycerol metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008889
IEA
GOA Databaseglycerophosphodiester phosphodiesterase activity
GO:0008889
IBA
Gene Ontologyglycerophosphodiester phosphodiesterase activity1
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0008081
IEA
GOA Databasephosphoric diester hydrolase activity
GO:0008081
IEA
InterProphosphoric diester hydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISM
Gene Ontologychloroplast
GO:0031225
TAS
Gene Ontologyanchored component of membrane2
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily
IPR030395 Glycerophosphodiester phosphodiesterase domain
Mapman id Description
35.1 not assigned.annotated