Gene: AT3G16780

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G16780
  • Transcript Identifier AT3G16780.1
  • Gene Type Coding gene
  • Location Chr3 : 5708982-5710249 : positive

Gene Family Information

  • ID HOM05D001493
  • #Genes/#Species 424/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G16780.1
  • uniprot Q9LUQ6

Descriptions

  • Description Ribosomal protein L19e family protein
  • Computational description Ribosomal protein L19e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19/L19e (InterPro:IPR000196), Ribosomal protein L19/L19e, domain 3 (InterPro:IPR015974), Ribosomal protein L19/L19e, domain 1 (InterPro:IPR015972); BEST Arabidopsis thaliana protein match is: Ribosomal protein L19e family protein (TAIR:AT4G02230.1); Has 1139 Blast hits to 1139 proteins in 410 species: Archae - 291; Bacteria - 0; Metazoa - 317; Fungi - 171; Plants - 158; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
Gene Ontologytranslation
GO:0006412
IEA
InterProtranslation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding1
GO:0003723
IEA
InterProRNA binding
GO:0003735
IDA
IEA
GOA Databasestructural constituent of ribosome
GO:0003735
IBA
Gene Ontologystructural constituent of ribosome1
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0003729
IDA, HDA
Gene OntologymRNA binding2 3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0022625
IDA
IEA
GOA Databasecytosolic large ribosomal subunit
GO:0022625
HDA
IBA
Gene Ontologycytosolic large ribosomal subunit1 4
GO:0022625
IEA
InterProcytosolic large ribosomal subunit
GO:0005840
IEA
GOA Databaseribosome
GO:0005840
IEA
InterProribosome
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005829
HDA
Gene Ontologycytosol5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000196 Ribosomal protein L19/L19e
IPR015972 Ribosomal protein L19/L19e, domain 1
IPR039547 60S ribosomal protein L19
IPR035970 Ribosomal protein L19/L19e superfamily
IPR033935 Ribosomal protein L19, eukaryotic
Mapman id Description
17.1.2.1.20 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL19