Gene: AT3G13880

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G13880
  • Transcript Identifier AT3G13880.1
  • Gene Type Coding gene
  • Location Chr3 : 4572180-4574426 : positive

Gene Family Information

  • ID HOM05D000001
  • #Genes/#Species 35287/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G13880.1
  • uniprot Q9LRV9

Descriptions

  • Description Tetratricopeptide repeat (TPR)-like superfamily protein
  • Computational description Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27610.1); Has 47940 Blast hits to 13892 proteins in 261 species: Archae - 0; Bacteria - 5; Metazoa - 141; Fungi - 107; Plants - 47020; Viruses - 0; Other Eukaryotes - 667 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1900864
IMP
Gene Ontologymitochondrial RNA modification1
GO:1900865
IMP
Gene Ontologychloroplast RNA modification1
GO:0009451
IBA
Gene OntologyRNA modification2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IBA
Gene OntologyRNA binding2
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IEA
GOA Databasemitochondrion
GO:0005739
ISM
Gene Ontologymitochondrion
GO:0043231
IBA
Gene Ontologyintracellular membrane-bounded organelle2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002885 Pentatricopeptide repeat
IPR011990 Tetratricopeptide-like helical domain superfamily
Mapman id Description
16.11.3.3.4.26 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (OTP72)