Gene: AT3G13672

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G13672
  • Transcript Identifier AT3G13672.1
  • Gene Type Coding gene
  • Location Chr3 : 4473541-4474343 : negative

Gene Family Information

  • ID HOM05D000390
  • #Genes/#Species 1264/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G13672.1
  • Alias SINA2
  • uniprot Q93WE4

Descriptions

  • Description TRAF-like superfamily protein
  • Computational description TRAF-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Seven-in-absentia protein, sina (InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: seven in absentia of Arabidopsis 2 (TAIR:AT3G58040.1); Has 478 Blast hits to 478 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 0; Plants - 224; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006511
IEA
Gene Ontologyubiquitin-dependent protein catabolic process
GO:0006511
IEA
InterProubiquitin-dependent protein catabolic process
GO:1902584
IMP
Gene Ontologypositive regulation of response to water deprivation1
GO:0016567
IDA
Gene Ontologyprotein ubiquitination2
GO:2000785
IMP
Gene Ontologyregulation of autophagosome assembly2
GO:0007275
IEA
InterPromulticellular organism development

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0005515
IEA
InterProprotein binding
GO:0042803
IPI
Gene Ontologyprotein homodimerization activity1
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IDA
IEA
Gene Ontologycytoplasm1
GO:0005737
IEA
InterProcytoplasm
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
Gene Ontologynucleus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR018121 Seven-in-absentia protein, TRAF-like domain
IPR008974 TRAF-like
Mapman id Description
19.2.2.1.4.3.5 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.E3 ubiquitin ligase (SINA)