Gene: AT3G13460
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G13460
- Transcript Identifier AT3G13460.1
- Gene Type Coding gene
- Location Chr3 : 4385274-4388220 : negative
Gene Family Information
- ID HOM05D000412
- #Genes/#Species 1233/100
- Phylogenetic origin
- ID ORTHO05D000429
- #Genes/#Species 945/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G13460.1
- symbol ECT2
- uniprot Q9LJE5
Descriptions
- Description evolutionarily conserved C-terminal region 2
- Computational description evolutionarily conserved C-terminal region 2 (ECT2); FUNCTIONS IN: protein binding; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 4 (TAIR:AT1G55500.2); Has 1777 Blast hits to 1661 proteins in 257 species: Archae - 0; Bacteria - 83; Metazoa - 881; Fungi - 229; Plants - 416; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0061157 | IBA | Gene Ontology | mRNA destabilization | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | Gene Ontology | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003729 | IDA, IPI, HDA IBA | Gene Ontology | mRNA binding | 1 2 3 4 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 5 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA, HDA ISM | Gene Ontology | nucleus | 6 7 |
| GO:0005829 | IDA | GOA Database | cytosol | |
| GO:0005829 | HDA | Gene Ontology | cytosol | 8 |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | IDA, HDA IBA | Gene Ontology | cytoplasm | 1 6 7 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007275 | YTH domain |
| Mapman id | Description |
|---|---|
| 16.5.8.2.1 | RNA processing.RNA modification.mRNA methylation.N6-methyladenosine methylation reading.methylation reader (ECT) |