Gene: AT3G13060
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G13060
- Transcript Identifier AT3G13060.2
- Gene Type Coding gene
- Location Chr3 : 4180625-4183632 : positive
Gene Family Information
- ID HOM05D000412
- #Genes/#Species 1233/100
- Phylogenetic origin
- ID ORTHO05D000429
- #Genes/#Species 945/98
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT3G13060.2
- symbol ECT5
- uniprot Q0WR25
Descriptions
- Description evolutionarily conserved C-terminal region 5
- Computational description evolutionarily conserved C-terminal region 5 (ECT5); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.2); Has 1274 Blast hits to 1220 proteins in 186 species: Archae - 0; Bacteria - 12; Metazoa - 603; Fungi - 138; Plants - 381; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).
- Computational description evolutionarily conserved C-terminal region 5 (ECT5); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.4); Has 1288 Blast hits to 1234 proteins in 189 species: Archae - 0; Bacteria - 12; Metazoa - 605; Fungi - 140; Plants - 385; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0061157 | IBA | Gene Ontology | mRNA destabilization | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | Gene Ontology | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003729 | IDA, HDA IBA | Gene Ontology | mRNA binding | 1 2 3 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005737 | IBA | Gene Ontology | cytoplasm | 1 |
| GO:0005829 | IDA | GOA Database | cytosol |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007275 | YTH domain |
| Mapman id | Description |
|---|---|
| 16.5.8.2.1 | RNA processing.RNA modification.mRNA methylation.N6-methyladenosine methylation reading.methylation reader (ECT) |