Gene: AT3G11940

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G11940
  • Transcript Identifier AT3G11940.2
  • Gene Type Coding gene
  • Location Chr3 : 3778175-3779354 : negative

Gene Family Information

  • ID HOM05D000861
  • #Genes/#Species 694/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G11940.2
  • symbol RPS5A
  • Alias AML1,ARABIDOPSIS MINUTE-LIKE 1,ATRPS5A,ribosomal protein 5A
  • uniprot P51427

Descriptions

  • Description ribosomal protein 5A
  • Computational description ribosomal protein 5A (RPS5A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7, conserved site (InterPro:IPR020606), Ribosomal protein S7, eukaryotic/archaeal (InterPro:IPR005716), Ribosomal protein S7 (InterPro:IPR000235); BEST Arabidopsis thaliana protein match is: ribosomal protein 5B (TAIR:AT2G37270.2); Has 8664 Blast hits to 8664 proteins in 3504 species: Archae - 243; Bacteria - 4586; Metazoa - 986; Fungi - 184; Plants - 1132; Viruses - 0; Other Eukaryotes - 1533 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
GOA Databasetranslation
GO:0006412
IBA
Gene Ontologytranslation1
GO:0006412
IEA
InterProtranslation
GO:0000028
IBA
Gene Ontologyribosomal small subunit assembly1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IEA
GOA Databasestructural constituent of ribosome
GO:0003735
IBA
Gene Ontologystructural constituent of ribosome1
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0019843
IBA
Gene OntologyrRNA binding1
GO:0003729
IDA, HDA
IBA
Gene OntologymRNA binding1 2 3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005618
IDA
GOA Databasecell wall
GO:0042788
ISO
PLAZA Integrative Orthologypolysomal ribosome AT2G37270
GO:0005774
ISO
PLAZA Integrative Orthologyvacuolar membrane AT2G37270
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT2G37270
GO:0015935
IEA
GOA Databasesmall ribosomal subunit
GO:0015935
IEA
InterProsmall ribosomal subunit
GO:0005840
IEA
GOA Databaseribosome
GO:0005840
IBA
Gene Ontologyribosome1
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma4
GO:0022626
IDA
GOA Databasecytosolic ribosome
GO:0022626
HDA
Gene Ontologycytosolic ribosome5
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0005773
IDA
GOA Databasevacuole
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0022627
IBA
Gene Ontologycytosolic small ribosomal subunit1
GO:0005829
HDA
Gene Ontologycytosol6
GO:0009505
HDA
Gene Ontologyplant-type cell wall7
GO:0000325
HDA
Gene Ontologyplant-type vacuole8

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000235 Ribosomal protein S5/S7
IPR005716 Ribosomal protein S5/S7, eukaryotic/archaeal
IPR036823 Ribosomal protein S7 domain superfamily
IPR023798 Ribosomal protein S7 domain
Mapman id Description
17.1.3.1.6 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS5