Gene: AT3G09680

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G09680
  • Transcript Identifier AT3G09680.1
  • Gene Type Coding gene
  • Location Chr3 : 2969197-2970291 : negative

Gene Family Information

  • ID HOM05D000666
  • #Genes/#Species 858/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G09680.1
  • uniprot Q9SF35

Descriptions

  • Description Ribosomal protein S12/S23 family protein
  • Computational description Ribosomal protein S12/S23 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, nucleolus; CONTAINS InterPro DOMAIN/s: Ribosomal protein S23, eukaryotic/archaeal (InterPro:IPR005680), Ribosomal protein S12/S23 (InterPro:IPR006032), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); BEST Arabidopsis thaliana protein match is: Ribosomal protein S12/S23 family protein (TAIR:AT5G02960.1); Has 9046 Blast hits to 9043 proteins in 3116 species: Archae - 259; Bacteria - 5143; Metazoa - 487; Fungi - 298; Plants - 975; Viruses - 0; Other Eukaryotes - 1884 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
GOA Databasetranslation
GO:0006412
IBA
Gene Ontologytranslation1
GO:0006412
IEA
InterProtranslation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IDA
IEA
GOA Databasestructural constituent of ribosome
GO:0003735
IBA
Gene Ontologystructural constituent of ribosome1
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0003729
IDA
Gene OntologymRNA binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015935
IEA
GOA Databasesmall ribosomal subunit
GO:0015935
IEA
InterProsmall ribosomal subunit
GO:0005840
IEA
GOA Databaseribosome
GO:0005840
IBA
Gene Ontologyribosome1
GO:0005840
IEA
InterProribosome
GO:0022626
IDA
GOA Databasecytosolic ribosome
GO:0022626
HDA
Gene Ontologycytosolic ribosome3
GO:0005730
IDA
GOA Databasenucleolus
GO:0005730
HDA
Gene Ontologynucleolus4
GO:0022627
IDA
GOA Databasecytosolic small ribosomal subunit
GO:0022627
HDA
IBA
Gene Ontologycytosolic small ribosomal subunit1 5
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0042788
IDA
GOA Databasepolysomal ribosome
GO:0005829
HDA
Gene Ontologycytosol6
GO:0005794
RCA
Gene OntologyGolgi apparatus7

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012340 Nucleic acid-binding, OB-fold
IPR006032 Ribosomal protein S12/S23
IPR005680 Ribosomal protein S23, eukaryotic/archaeal
Mapman id Description
17.1.3.1.24 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS23