Gene: AT3G07840

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G07840
  • Transcript Identifier AT3G07840.1
  • Gene Type Coding gene
  • Location Chr3 : 2501893-2503475 : negative

Gene Family Information

  • ID HOM05D000037
  • #Genes/#Species 5045/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G07840.1
  • uniprot Q9SFD0

Descriptions

  • Description Pectin lyase-like superfamily protein
  • Computational description Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G07820.1); Has 3647 Blast hits to 3632 proteins in 442 species: Archae - 4; Bacteria - 810; Metazoa - 14; Fungi - 1262; Plants - 1450; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005975
IEA
Gene Ontologycarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0008152
IEA
GOA Databasemetabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004650
IEA
Gene Ontologypolygalacturonase activity
GO:0004650
IEA
InterPropolygalacturonase activity
GO:0016829
IEA
GOA Databaselyase activity
GO:0016798
IEA
GOA Databasehydrolase activity, acting on glycosyl bonds
GO:0016787
IEA
GOA Databasehydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005576
ISM
Gene Ontologyextracellular region
GO:0005618
IEA
GOA Databasecell wall

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006626 Parallel beta-helix repeat
IPR011050 Pectin lyase fold/virulence factor
IPR000743 Glycoside hydrolase, family 28
IPR012334 Pectin lyase fold
Mapman id Description
50.3.2 Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase