Gene: AT3G03950
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G03950
- Transcript Identifier AT3G03950.2
- Gene Type Coding gene
- Location Chr3 : 1021502-1023767 : positive
Gene Family Information
- ID HOM05D000412
- #Genes/#Species 1233/100
- Phylogenetic origin
- ID ORTHO05D000429
- #Genes/#Species 945/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT3G03950.2
- symbol ECT1
- uniprot Q3MK94
Descriptions
- Description evolutionarily conserved C-terminal region 1
- Computational description evolutionarily conserved C-terminal region 1 (ECT1); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 3 (TAIR:AT5G61020.1); Has 965 Blast hits to 955 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 418; Fungi - 123; Plants - 338; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).
- Computational description evolutionarily conserved C-terminal region 1 (ECT1); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 3 (TAIR:AT5G61020.1); Has 964 Blast hits to 954 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 417; Fungi - 123; Plants - 338; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0019722 | TAS | Gene Ontology | calcium-mediated signaling | 1 |
| GO:0061157 | IBA | Gene Ontology | mRNA destabilization | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | Gene Ontology | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 1 |
| GO:0003729 | IDA, HDA IBA | Gene Ontology | mRNA binding | 2 3 4 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 1 |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | IBA | Gene Ontology | cytoplasm | 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007275 | YTH domain |
| Mapman id | Description |
|---|---|
| 16.5.8.2.1 | RNA processing.RNA modification.mRNA methylation.N6-methyladenosine methylation reading.methylation reader (ECT) |