Gene: AT2G47890

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G47890
  • Transcript Identifier AT2G47890.1
  • Gene Type Coding gene
  • Location Chr2 : 19608245-19609476 : positive

Gene Family Information

  • ID HOM05D000707
  • #Genes/#Species 812/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G47890.1
  • uniprot O82256

Descriptions

  • Description B-box type zinc finger protein with CCT domain-containing protein
  • Computational description B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G28050.1); Has 3246 Blast hits to 2264 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3153; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
TAS
Gene Ontologyregulation of transcription, DNA-templated1
GO:0007623
IEP
Gene Ontologycircadian rhythm2
GO:0009416
IEP
Gene Ontologyresponse to light stimulus2
GO:0009637
IEP
Gene Ontologyresponse to blue light2
GO:0010114
IEP
Gene Ontologyresponse to red light2
GO:0010218
IEP
Gene Ontologyresponse to far red light2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity1
GO:0000976
IPI
Gene Ontologytranscription cis-regulatory region binding3
GO:0005515
IPI
Gene Ontologyprotein binding4
GO:0005515
IEA
InterProprotein binding
GO:0003677
IPI
Gene OntologyDNA binding2
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR010402 CCT domain
IPR000315 B-box-type zinc finger
Mapman id Description
15.5.1.2 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (BBX-CO)