Gene: AT2G47810

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G47810
  • Transcript Identifier AT2G47810.1
  • Gene Type Coding gene
  • Location Chr2 : 19582938-19583420 : negative

Gene Family Information

  • ID HOM05D000297
  • #Genes/#Species 1509/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G47810.1
  • symbol NF-YB5
  • full_name nuclear factor Y%2C subunit B5
  • uniprot O82248

Descriptions

  • Description nuclear factor Y, subunit B5
  • Computational description nuclear factor Y, subunit B5 (NF-YB5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: sepal, male gametophyte, root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B3 (TAIR:AT4G14540.1); Has 1476 Blast hits to 1476 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 483; Fungi - 353; Plants - 526; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045944
IEA
GOA Databasepositive regulation of transcription by RNA polymerase II
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0006357
IBA
Gene Ontologyregulation of transcription by RNA polymerase II1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001228
IEA
Gene OntologyDNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001228
IEA
InterProDNA-binding transcription activator activity, RNA polymerase II-specific
GO:0046982
IEA
Gene Ontologyprotein heterodimerization activity
GO:0046982
IEA
InterProprotein heterodimerization activity
GO:0043565
IEA
GOA Databasesequence-specific DNA binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0000978
IBA
Gene OntologyRNA polymerase II cis-regulatory region sequence-specific DNA binding1
GO:0000981
IBA
Gene OntologyDNA-binding transcription factor activity, RNA polymerase II-specific1
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016602
IEA
GOA DatabaseCCAAT-binding factor complex
GO:0016602
IBA
Gene OntologyCCAAT-binding factor complex1
GO:0016602
IEA
InterProCCAAT-binding factor complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009072 Histone-fold
IPR003958 Transcription factor CBF/NF-Y/archaeal histone domain
IPR027113 Transcription factor NFYB/HAP3
Mapman id Description
15.5.49.2 RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex.component NF-YB