Gene: AT2G41980

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G41980
  • Transcript Identifier AT2G41980.1
  • Gene Type Coding gene
  • Location Chr2 : 17523494-17524692 : negative

Gene Family Information

  • ID HOM05D000390
  • #Genes/#Species 1264/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G41980.1
  • uniprot P93748

Descriptions

  • Description Protein with RING/U-box and TRAF-like domain
  • Computational description Protein with RING/U-box and TRAF-like domains; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, SIAH-type (InterPro:IPR013010), Zinc finger, RING-type (InterPro:IPR001841), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven-in-absentia protein, sina (InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: seven in absentia of Arabidopsis 2 (TAIR:AT3G58040.1); Has 1924 Blast hits to 1907 proteins in 703 species: Archae - 0; Bacteria - 0; Metazoa - 1315; Fungi - 12; Plants - 485; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007275
IEA
InterPromulticellular organism development
GO:0006511
IEA
Gene Ontologyubiquitin-dependent protein catabolic process
GO:0006511
IEA
InterProubiquitin-dependent protein catabolic process
GO:2000785
IMP
Gene Ontologyregulation of autophagosome assembly1
GO:0016567
IDA, IPI
IEA
Gene Ontologyprotein ubiquitination1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0005515
IEA
InterProprotein binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0061630
IBA
Gene Ontologyubiquitin protein ligase activity3
GO:0008270
IEA
Gene Ontologyzinc ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IBA
Gene Ontologycytoplasm3
GO:0005737
IEA
InterProcytoplasm
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR008974 TRAF-like
IPR018121 Seven-in-absentia protein, TRAF-like domain
Mapman id Description
19.2.2.1.4.3.5 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.E3 ubiquitin ligase (SINA)