Gene: AT2G41850

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G41850
  • Transcript Identifier AT2G41850.1
  • Gene Type Coding gene
  • Location Chr2 : 17461918-17464059 : negative

Gene Family Information

  • ID HOM05D000037
  • #Genes/#Species 5045/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G41850.1
  • symbol PGAZAT
  • Alias ADPG2,ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2
  • full_name polygalacturonase abscission zone A. thaliana
  • uniprot Q8RY29

Descriptions

  • Description polygalacturonase ADPG2-like protein
  • Computational description polygalacturonase abscission zone A. thaliana (PGAZAT); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: cell wall modification involved in abscission, fruit dehiscence, floral organ abscission, anther dehiscence, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G57510.1); Has 4465 Blast hits to 4447 proteins in 569 species: Archae - 8; Bacteria - 1510; Metazoa - 14; Fungi - 1290; Plants - 1500; Viruses - 5; Other Eukaryotes - 138 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005975
IEA
GOA Databasecarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0008152
IEA
GOA Databasemetabolic process
GO:0071555
IEA
GOA Databasecell wall organization
GO:0045490
IBA
Gene Ontologypectin catabolic process1
GO:0010047
IMP
IBA
Gene Ontologyfruit dehiscence1 2
GO:0009901
IMP
IBA
Gene Ontologyanther dehiscence1 2
GO:0010227
IMP
Gene Ontologyfloral organ abscission2
GO:0009830
TAS
Gene Ontologycell wall modification involved in abscission2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004650
IEA
GOA Databasepolygalacturonase activity
GO:0004650
IDA
Gene Ontologypolygalacturonase activity2
GO:0004650
IEA
InterPropolygalacturonase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016798
IEA
GOA Databasehydrolase activity, acting on glycosyl bonds

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005618
IEA
GOA Databasecell wall
GO:0005576
IEA
GOA Databaseextracellular region
GO:0005576
ISM
Gene Ontologyextracellular region

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000743 Glycoside hydrolase, family 28
IPR012334 Pectin lyase fold
IPR006626 Parallel beta-helix repeat
IPR011050 Pectin lyase fold/virulence factor
Mapman id Description
21.3.5.1.1 Cell wall organisation.pectin.modification and degradation.polygalacturonase activities.polygalacturonase (QRT2)