Gene: AT2G38080

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G38080
  • Transcript Identifier AT2G38080.1
  • Gene Type Coding gene
  • Location Chr2 : 15934540-15937352 : positive

Gene Family Information

  • ID HOM05D000080
  • #Genes/#Species 3730/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G38080.1
  • symbol IRX12
  • Alias ATLMCO4,ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4,LAC4,LACCASE 4,LMCO4,LACCASE-LIKE MULTICOPPER OXIDASE 4
  • full_name IRREGULAR XYLEM 12
  • uniprot O80434

Descriptions

  • Description Laccase/Diphenol oxidase family protein
  • Computational description IRREGULAR XYLEM 12 (IRX12); FUNCTIONS IN: laccase activity; INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 10 (TAIR:AT5G01190.1); Has 9472 Blast hits to 8326 proteins in 1422 species: Archae - 45; Bacteria - 3703; Metazoa - 467; Fungi - 3359; Plants - 1600; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046274
IEA
GOA Databaselignin catabolic process
GO:0046274
IEA
InterProlignin catabolic process
GO:0009807
ISO
PLAZA Integrative Orthologylignan biosynthetic process Solyc06g076760.2
GO:0009809
IMP, IGI
Gene Ontologylignin biosynthetic process1 2
GO:0009834
IMP
Gene Ontologyplant-type secondary cell wall biogenesis3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0052716
IEA
Gene Ontologyhydroquinone:oxygen oxidoreductase activity
GO:0052716
IEA
InterProhydroquinone:oxygen oxidoreductase activity
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0016491
IMP
IBA
Gene Ontologyoxidoreductase activity1 4
GO:0016491
IEA
InterProoxidoreductase activity
GO:0005507
IEA
Gene Ontologycopper ion binding
GO:0005507
IEA
InterProcopper ion binding
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048046
IEA
GOA Databaseapoplast
GO:0048046
IEA
InterProapoplast
GO:0005576
IEA
GOA Databaseextracellular region
GO:0005576
ISM
Gene Ontologyextracellular region
GO:0009505
IDA
Gene Ontologyplant-type cell wall5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR008972 Cupredoxin
IPR001117 Multicopper oxidase, type 1
IPR034285 Laccase, second cupredoxin domain
IPR011706 Multicopper oxidase, C-terminal
IPR011707 Multicopper oxidase, N-termianl
IPR045087 Multicopper oxidase
IPR034288 Laccase, first cupredoxin domain
IPR017761 Laccase
IPR034289 Laccase, third cupredoxin domain
Mapman id Description
21.6.2.2 Cell wall organisation.lignin.monolignol conjugation and polymerization.lignin laccase