Gene: AT2G37860

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G37860
  • Transcript Identifier AT2G37860.3
  • Gene Type Coding gene
  • Location Chr2 : 15856952-15858793 : positive

Gene Family Information

  • ID HOM05D001368
  • #Genes/#Species 457/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G37860.3
  • symbol LCD1
  • full_name LOWER CELL DENSITY 1
  • uniprot B9DFK5

Descriptions

  • Description reticulata-like protein, putative (DUF3411)
  • Computational description LOWER CELL DENSITY 1 (LCD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: leaf development; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: reticulata-related 1 (TAIR:AT5G22790.1); Has 533 Blast hits to 494 proteins in 88 species: Archae - 2; Bacteria - 54; Metazoa - 55; Fungi - 24; Plants - 316; Viruses - 7; Other Eukaryotes - 75 (source: NCBI BLink).
  • Computational description LOWER CELL DENSITY 1 (LCD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: leaf development; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: reticulata-related 1 (TAIR:AT5G22790.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0099402
IBA
Gene Ontologyplant organ development1
GO:0009658
IMP
Gene Ontologychloroplast organization2
GO:0009648
IMP
Gene Ontologyphotoperiodism3
GO:0000302
IMP
Gene Ontologyresponse to reactive oxygen species3
GO:0048366
IMP
Gene Ontologyleaf development4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003674
ND
Gene Ontologymolecular_function

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IBA
Gene Ontologymitochondrion1
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
Gene Ontologychloroplast5
GO:0009536
IDA
IEA
GOA Databaseplastid
GO:0009536
HDA
Gene Ontologyplastid6
GO:0009941
IDA
GOA Databasechloroplast envelope
GO:0009941
HDA
Gene Ontologychloroplast envelope7
GO:0031969
IEA
GOA Databasechloroplast membrane
GO:0009706
IBA
Gene Ontologychloroplast inner membrane1
GO:0005783
HDA
Gene Ontologyendoplasmic reticulum8

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR021825 Protein RETICULATA-related
Mapman id Description
35.1 not assigned.annotated