Gene: AT2G34880

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G34880
  • Transcript Identifier AT2G34880.1
  • Gene Type Coding gene
  • Location Chr2 : 14711880-14716634 : negative

Gene Family Information

  • ID HOM05D000329
  • #Genes/#Species 1418/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G34880.1
  • symbol MEE27
  • Alias JMJ15,Jumonji domain-containing protein 15,PKDM7C
  • full_name maternal effect embryo arrest 27
  • uniprot O64752

Descriptions

  • Description Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
  • Computational description maternal effect embryo arrest 27 (MEE27); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: embryo development ending in seed dormancy, regulation of transcription, pollen development; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), FY-rich, C-terminal subgroup (InterPro:IPR018516), Transcription factor jumonji (InterPro:IPR013129), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G30810.2); Has 2070 Blast hits to 1543 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 1091; Fungi - 459; Plants - 363; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006338
IBA
Gene Ontologychromatin remodeling1
GO:0006325
IEA
GOA Databasechromatin organization
GO:0016577
IEA
GOA Databasehistone demethylation
GO:0034721
IEA
GOA Databasehistone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0009909
IDA
Gene Ontologyregulation of flower development2
GO:0009555
IMP
Gene Ontologypollen development3
GO:0009793
IMP
Gene Ontologyembryo development ending in seed dormancy4
GO:0006355
TAS
Gene Ontologyregulation of transcription, DNA-templated5

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0051213
IEA
GOA Databasedioxygenase activity
GO:0032452
IBA
Gene Ontologyhistone demethylase activity1
GO:0034647
IDA
IBA
Gene Ontologyhistone demethylase activity (H3-trimethyl-K4 specific)1 2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus1
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003888 FY-rich, N-terminal
IPR003349 JmjN domain
IPR003347 JmjC domain
IPR004198 Zinc finger, C5HC2-type
IPR003889 FY-rich, C-terminal
Mapman id Description
12.3.3.8.4 Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (PKDM7)