Gene: AT2G30800

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G30800
  • Transcript Identifier AT2G30800.1
  • Gene Type Coding gene
  • Location Chr2 : 13120585-13126635 : negative

Gene Family Information

  • ID HOM05D000113
  • #Genes/#Species 2932/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G30800.1
  • symbol HVT1
  • Alias ATVT-1
  • uniprot F4INY4

Descriptions

  • Description helicase in vascular tissue and tapetum
  • Computational description helicase in vascular tissue and tapetum (HVT1); CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), Ankyrin repeat-containing domain (InterPro:IPR020683), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Single-stranded nucleic acid binding R3H (InterPro:IPR001374), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: nuclear DEIH-boxhelicase (TAIR:AT1G06670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032508
IEA
GOA DatabaseDNA duplex unwinding

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004386
ISS
Gene Ontologyhelicase activity1
GO:0004386
IEA
InterProhelicase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding2
GO:0003678
IEA
Gene OntologyDNA helicase activity
GO:0003724
IEA
Gene OntologyRNA helicase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISS, ISM, IBA
Gene Ontologynucleus1 2
GO:0005622
IBA
Gene Ontologyintracellular anatomical structure2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011709 Domain of unknown function DUF1605
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR007502 Helicase-associated domain
IPR001374 R3H domain
IPR036867 R3H domain superfamily
IPR036770 Ankyrin repeat-containing domain superfamily
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR011545 DEAD/DEAH box helicase domain
IPR034083 DExH-box ATP-dependent RNA helicase, R3H domain
Mapman id Description
35.1 not assigned.annotated