Gene: AT2G28830

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G28830
  • Transcript Identifier AT2G28830.1
  • Gene Type Coding gene
  • Location Chr2 : 12368388-12370388 : negative

Gene Family Information

  • ID HOM05D000215
  • #Genes/#Species 1875/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G28830.1
  • symbol PUB12
  • Alias AtPUB12
  • full_name PLANT U-BOX 12
  • uniprot Q9ZV31

Descriptions

  • Description armadillo/beta-catenin repeat protein
  • Computational description PLANT U-BOX 12 (PUB12); FUNCTIONS IN: ubiquitin-protein ligase activity, structural constituent of ribosome, rRNA binding, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex, ribosome, intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L16 (InterPro:IPR000114), U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Ribosomal protein L10e/L16 (InterPro:IPR016180), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Ribosomal protein L16, conserved site (InterPro:IPR020798); BEST Arabidopsis thaliana protein match is: plant U-box 13 (TAIR:AT3G46510.1); Has 16927 Blast hits to 15027 proteins in 4135 species: Archae - 0; Bacteria - 5491; Metazoa - 1535; Fungi - 908; Plants - 5936; Viruses - 3; Other Eukaryotes - 3054 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042742
IGI
Gene Ontologydefense response to bacterium1
GO:0050777
IGI
Gene Ontologynegative regulation of immune response2
GO:0016567
IEA
GOA Databaseprotein ubiquitination
GO:0016567
IEA
InterProprotein ubiquitination
GO:0007166
IEA
GOA Databasecell surface receptor signaling pathway

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003824
IEA
Gene Ontologycatalytic activity
GO:0004842
IEA
GOA Databaseubiquitin-protein transferase activity
GO:0004842
IDA
Gene Ontologyubiquitin-protein transferase activity1
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0005515
IEA
InterProprotein binding
GO:0016740
IEA
GOA Databasetransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM, IBA
Gene Ontologycytoplasm3
GO:0005634
IBA
Gene Ontologynucleus3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011989 Armadillo-like helical
IPR016024 Armadillo-type fold
IPR000225 Armadillo
IPR003613 U box domain
IPR013083 Zinc finger, RING/FYVE/PHD-type
Mapman id Description
19.2.2.1.4.2.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.U-Box E3 ligase activities.group-II ligase