Gene: AT2G27370
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G27370
- Transcript Identifier AT2G27370.1
- Gene Type Coding gene
- Location Chr2 : 11708628-11709905 : negative
Gene Family Information
- ID HOM05D000748
- #Genes/#Species 779/92
- Phylogenetic origin
- ID ORTHO05D000394
- #Genes/#Species 1005/94
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT2G27370.1
- symbol CASP3
- full_name Casparian strip membrane domain protein 3
- uniprot Q9ZQI2
Descriptions
- Description Uncharacterized protein family (UPF0497)
- Computational description Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G36100.1); Has 591 Blast hits to 591 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 591; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042545 | IMP IBA | Gene Ontology | cell wall modification | 1 2 |
| GO:0071555 | IEA | GOA Database | cell wall organization | |
| GO:0007043 | IDA IBA | Gene Ontology | cell-cell junction assembly | 1 2 |
| GO:0006508 | ISS | Gene Ontology | proteolysis | |
| GO:1902004 | ISS | Gene Ontology | positive regulation of amyloid-beta formation | |
| GO:0031647 | ISS | Gene Ontology | regulation of protein stability |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0051539 | IBA | Gene Ontology | 4 iron, 4 sulfur cluster binding | 2 |
| GO:0042803 | IDA | Gene Ontology | protein homodimerization activity | 1 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0016021 | IEA | GOA Database | integral component of membrane | |
| GO:0005886 | IEA | GOA Database | plasma membrane | |
| GO:0005886 | IDA IBA | Gene Ontology | plasma membrane | 1 2 |
| GO:0048226 | IDA IBA | Gene Ontology | Casparian strip | 1 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 21.10.3 | Cell wall organisation.Casparian strip formation.lignin polymerization scaffold protein (CASP) |