Gene: AT2G21400

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G21400
  • Transcript Identifier AT2G21400.3
  • Gene Type Coding gene
  • Location Chr2 : 9158387-9159541 : positive

Gene Family Information

  • ID HOM05D000711
  • #Genes/#Species 809/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G21400.3
  • symbol SRS3
  • uniprot Q9SJT8

Descriptions

  • Description SHI-related sequence3
  • Computational description SHI-related sequence3 (SRS3); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 181 Blast hits to 177 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045893
IBA
Gene Ontologypositive regulation of transcription, DNA-templated1
GO:0009734
IEA
GOA Databaseauxin-activated signaling pathway
GO:0009851
IEA
GOA Databaseauxin biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IBA
Gene OntologyDNA binding1
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISS, IBA
Gene Ontologynucleus1
GO:0005739
ISM
Gene Ontologymitochondrion

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007818 SHI protein family
IPR006511 SHORT INTERNODES, C-terminal
IPR006510 Zinc finger, lateral root primordium type 1
Mapman id Description
15.5.45 RNA biosynthesis.transcriptional regulation.transcription factor (SRS)