Gene: AT2G18880

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G18880
  • Transcript Identifier AT2G18880.1
  • Gene Type Coding gene
  • Location Chr2 : 8176386-8178788 : positive

Gene Family Information

  • ID HOM05D000809
  • #Genes/#Species 730/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G18880.1
  • symbol VEL2
  • Alias VIL3,VIN3-like 3
  • full_name vernalization5/VIN3-like 2
  • uniprot Q5BPT4

Descriptions

  • Description vernalization5/VIN3-like protein
  • Computational description vernalization5/VIN3-like (VEL2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: vernalization5/VIN3-like (TAIR:AT4G30200.3); Has 278 Blast hits to 186 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 278; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010048
IEA
Gene Ontologyvernalization response
GO:0010048
IEA
InterProvernalization response
GO:0040029
IEA
Gene Ontologyregulation of gene expression, epigenetic
GO:0040029
IEA
InterProregulation of gene expression, epigenetic
GO:0009409
IEP
Gene Ontologyresponse to cold1
GO:0070417
IEP
Gene Ontologycellular response to cold2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036116 Fibronectin type III superfamily
IPR013783 Immunoglobulin-like fold
IPR032881 Oberon, PHD finger domain
IPR003961 Fibronectin type III
IPR044514 Vernalization insensitive 3-like
Mapman id Description
12.3.3.2.1.2.2 Chromatin organisation.post-translational histone modification.histone lysine methylation.class-I histone methyltransferase activities.PRC2 histone methylation complex.associated protein factors.PRC2-VRN-interacting factor (VIN3/VEL)