Gene: AT2G17560

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G17560
  • Transcript Identifier AT2G17560.1
  • Gene Type Coding gene
  • Location Chr2 : 7642486-7643468 : negative

Gene Family Information

  • ID HOM05D000727
  • #Genes/#Species 800/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G17560.1
  • symbol HMGB4
  • Alias NFD04,NFD4,NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4
  • uniprot Q42344

Descriptions

  • Description high mobility group B4
  • Computational description high mobility group B4 (HMGB4); FUNCTIONS IN: chromatin binding, structural constituent of chromatin, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group B5 (TAIR:AT4G35570.1); Has 4827 Blast hits to 4510 proteins in 564 species: Archae - 0; Bacteria - 0; Metazoa - 3518; Fungi - 343; Plants - 550; Viruses - 3; Other Eukaryotes - 413 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006333
TAS
Gene Ontologychromatin assembly or disassembly1
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity2
GO:0003682
TAS
Gene Ontologychromatin binding1
GO:0030527
TAS
Gene Ontologystructural constituent of chromatin1
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IDA
ISS
Gene OntologyDNA binding3
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding Zm00001eb271910

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus4
GO:0000785
TAS
Gene Ontologychromatin1
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
Gene Ontologycytoplasm4
GO:0005829
IEA
GOA Databasecytosol

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009071 High mobility group box domain
IPR036910 High mobility group box domain superfamily
IPR031061 High mobility group protein HMGB, plant
Mapman id Description
12.1.3.1 Chromatin organisation.chromatin structure.DNA bending.architectural protein (HMG-B)