Gene: AT2G13960

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G13960
  • Transcript Identifier AT2G13960.1
  • Gene Type Coding gene
  • Location Chr2 : 5859683-5861105 : positive

Gene Family Information

  • ID HOM05D000119
  • #Genes/#Species 2812/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G13960.1
  • uniprot Q9ZPU2

Descriptions

  • Description Homeodomain-like superfamily protein
  • Computational description Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-5 (TAIR:AT5G02320.2); Has 3753 Blast hits to 3002 proteins in 286 species: Archae - 0; Bacteria - 0; Metazoa - 850; Fungi - 374; Plants - 1226; Viruses - 6; Other Eukaryotes - 1297 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
ISS
Gene Ontologyregulation of transcription, DNA-templated1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity1
GO:0003677
IEA
GOA DatabaseDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001005 SANT/Myb domain
IPR017930 Myb domain
IPR009057 Homeobox-like domain superfamily
Mapman id Description
35.1 not assigned.annotated